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Analysis of haplotype sequences
Book chapter   Open access

Analysis of haplotype sequences

S.S. Lloyd, E.J. Steele and R.L. Dawkins
Next Generation Sequencing - Advances, Applications and Challenges, pp.346-368
InTech Open
2016
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Abstract

In this era of whole-genome, next-generation sequencing, it is important to have a clear understanding of the concept of “haplotype”. We show here that most of the important regions of the genome can be described in terms of polymorphic frozen blocks (PFB). At each PFB, there are numerous, even hundreds, of alternative ancestral haplotypes. Haplotypes, not genes, can be regarded as the principal unit of inheritance. We illustrate how sequence data can be analysed to reveal and define these ancestral haplotypes.

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