Journal article
Draft genome sequence of adzuki bean, Vigna angularis
Scientific Reports, Vol.5(1), Art. 8069
2015
Abstract
Adzuki bean (Vigna angularis var. angularis) is a dietary legume crop in East Asia. The presumed progenitor (Vigna angularis var. nipponensis) is widely found in East Asia, suggesting speciation and domestication in these temperate climate regions. Here, we report a draft genome sequence of adzuki bean. The genome assembly covers 75% of the estimated genome and was mapped to 11 pseudo-chromosomes. Gene prediction revealed 26,857 high confidence protein-coding genes evidenced by RNAseq of different tissues. Comparative gene expression analysis with V. radiata showed that the tissue specificity of orthologous genes was highly conserved. Additional re-sequencing of wild adzuki bean, V. angularis var. nipponensis and V. nepalensis, was performed to analyze the variations between cultivated and wild adzuki bean. The determined divergence time of adzuki bean and the wild species predated archaeology-based domestication time. The present genome assembly will accelerate the genomics-assisted breeding of adzuki bean.
Details
- Title
- Draft genome sequence of adzuki bean, Vigna angularis
- Authors/Creators
- Y.J. Kang (Author/Creator) - Seoul National UniversityD. Satyawan (Author/Creator) - Seoul National UniversityS. Shim (Author/Creator) - Seoul National UniversityT. Lee (Author/Creator) - Seoul National UniversityJ. Lee (Author/Creator) - Seoul National UniversityW.J. Hwang (Author/Creator) - Seoul National UniversityS.K. Kim (Author/Creator) - Seoul National UniversityP. Lestari (Author/Creator) - Indonesian Agency for Agricultural Research and DevelopmentK. Laosatit (Author/Creator) - Kasetsart UniversityK.H. Kim (Author/Creator) - Rural Development AdministrationT.J. Ha (Author/Creator) - Public Procurement ServiceA. Chitikineni (Author/Creator) - International Crops Research Institute for the Semi-Arid TropicsM.Y. Kim (Author/Creator) - Seoul National UniversityJ-M Ko (Author/Creator) - Soybean Research Team, Legume &Oil Crop Research Division, Jeompiljae-ro 20, Miryang, Gyeongnamdo, 627-803, Korea.J-G Gwag (Author/Creator) - RDA (United States)J-K Moon (Author/Creator) - Rural Development AdministrationY-H Lee (Author/Creator) - Seoul National UniversityB-S Park (Author/Creator) - Rural Development AdministrationR.K. Varshney (Author/Creator) - International Crops Research Institute for the Semi-Arid TropicsS-H Lee (Author/Creator)
- Publication Details
- Scientific Reports, Vol.5(1), Art. 8069
- Publisher
- Springer Nature
- Identifiers
- 991005540071007891
- Copyright
- © 2015 The Authors.
- Murdoch Affiliation
- Murdoch University
- Language
- English
- Resource Type
- Journal article
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