Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia

R. Walker; E. Watkin; R. Tian; L. Bräu; G. O’Hara; L. Goodwin; J. Han; E. Lobos; M. Huntemann; A. Pati; T. Woyke; K. Mavromatis; V. Markowitz; N. Ivanova; N. Kyrpides; W. Reeve

doi:10.4056/sigs.5008793

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Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia

Journal article

Peer reviewed

Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia

R. Walker, E. Watkin, R. Tian, L. Bräu, G. O’Hara, L. Goodwin, J. Han, E. Lobos, M. Huntemann, A. Pati, …

Standards in Genomic Sciences, Vol.9(3), pp.551-561

2014

DOI: https://doi.org/10.4056/sigs.5008793

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Abstract

Burkholderia sp. strain WSM2230 is an aerobic, motile, Gram-negative, non-spore-forming acid-tolerant rod isolated from acidic soil collected in 2001 from Karijini National Park, Western Australia, using Kennedia coccinea (Coral Vine) as a host. WSM2230 was initially effective in nitrogen-fixation with K. coccinea, but subsequently lost symbiotic competence. Here we describe the features of Burkholderia sp. strain WSM2230, together with genome sequence information and its annotation. The 6,309,801 bp high-quality-draft genome is arranged into 33 scaffolds of 33 contigs containing 5,590 protein-coding genes and 63 RNA-only encoding genes. The genome sequence of WSM2230 failed to identify nodulation genes and provides an explanation for the observed failure of the laboratory grown strain to nodulate. The genome of this strain is one of 100 sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.

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Title: Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia
Authors/Creators: R. Walker (Author/Creator) - Curtin University
E. Watkin (Author/Creator) - Curtin University
R. Tian (Author/Creator) - Murdoch University
L. Bräu (Author/Creator) - Deakin University
G. O’Hara (Author/Creator) - Murdoch University
L. Goodwin (Author/Creator) - Los Alamos National Laboratory
J. Han (Author/Creator) - Joint Genome Institute
E. Lobos (Author/Creator) - Joint Genome Institute
M. Huntemann (Author/Creator) - Joint Genome Institute
A. Pati (Author/Creator) - Joint Genome Institute
T. Woyke (Author/Creator) - Joint Genome Institute
K. Mavromatis (Author/Creator) - Joint Genome Institute
V. Markowitz (Author/Creator) - Lawrence Berkeley National Laboratory
N. Ivanova (Author/Creator) - Joint Genome Institute
N. Kyrpides (Author/Creator) - Joint Genome Institute
W. Reeve (Author/Creator) - Murdoch University
Publication Details: Standards in Genomic Sciences, Vol.9(3), pp.551-561
Publisher: Genomic Standards Consortium
Identifiers: 991005543363207891
Copyright: © The Authors
Murdoch Affiliation: Centre for Rhizobium Studies
Language: English
Resource Type: Journal article

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Collaboration types: Domestic collaboration; International collaboration
Citation topics: 3 Agriculture, Environment & Ecology; 3.97 Plant Pathology; 3.97.892 Rhizobium-Legume Symbiosis
Web Of Science research areas: Genetics & Heredity; Microbiology
ESI research areas: Molecular Biology & Genetics