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Improving the efficiency of branch-and-bound complete-search NMR assignment using the symmetry of molecules and spectra
Journal article   Peer reviewed

Improving the efficiency of branch-and-bound complete-search NMR assignment using the symmetry of molecules and spectra

Andres Bernal, Andres M. Castillo, Fabio Gonzalez, Luc Patiny and Julien Wist
The Journal of chemical physics, Vol.142(7), 074103
2015
PMID: 25701998

Abstract

Chemistry Chemistry, Physical Physical Sciences Physics Physics, Atomic, Molecular & Chemical Science & Technology
Nuclear magnetic resonance (NMR) assignment of small molecules is presented as a typical example of a combinatorial optimization problem in chemical physics. Three strategies that help improve the efficiency of solution search by the branch and bound method are presented: 1. reduction of the size of the solution space by resort to a condensed structure formula, wherein symmetric nuclei are grouped together; 2. partitioning of the solution space based on symmetry, that becomes the basis for an efficient branching procedure; and 3. a criterion of selection of input restrictions that leads to increased gaps between branches and thus faster pruning of non-viable solutions. Although the examples chosen to illustrate this work focus on small-molecule NMR assignment, the results are generic and might help solving other combinatorial optimization problems.

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Collaboration types
Domestic collaboration
International collaboration
Citation topics
2 Chemistry
2.123 Protein Stucture, Folding & Modelling
2.123.248 Solid-State NMR
Web Of Science research areas
Chemistry, Physical
Physics, Atomic, Molecular & Chemical
ESI research areas
Chemistry
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