Shifting the limits in wheat research and breeding using a fully annotated reference genome

R. Appels; K. Eversole; C. Feuillet; B. Keller; J. Rogers; N. Stein; C.J. Pozniak; F. Choulet; A. Distelfeld; J. Poland; G. Ronen; O. Barad; K. Baruch; G. Keeble-Gagnère; M. Mascher; A.G. Sharpe; G. Ben-Zvi; A-A Josselin; A. Himmelbach; F. Balfourier; J. Gutierrez-Gonzalez; M. Hayden; C. Koh; G. Muehlbauer; R.K. Pasam; E. Paux; P. Rigault; J. Tibbits; V. Tiwari; M. Spannagl; D. Lang; H. Gundlach; G. Haberer; K.F.X. Mayer; D. Ormanbekova; V. Prade; H. Šimková; T. Wicker; D. Swarbreck; H. Rimbert; M. Felder; N. Guilhot; G. Kaithakottil; J. Keilwagen; P. Leroy; T. Lux; S. Twardziok; L. Venturini; A. Juhász; M. Abrouk; I. Fischer; C. Uauy; P. Borrill; R.H. Ramirez-Gonzalez; D. Arnaud; S. Chalabi; B. Chalhoub; A. Cory; R. Datla; M.W. Davey; J. Jacobs; S.J. Robinson; B. Steuernagel; F. van Ex; B.B.H. Wulff; M. Benhamed; A. Bendahmane; L. Concia; D. Latrasse; M. Alaux; J. Bartoš; A. Bellec; H. Berges; J. Doležel; Z. Frenkel; B. Gill; A. Korol; T. Letellier; O-A Olsen; K. Singh; M. Valárik; E. van der Vossen; S. Vautrin; S. Weining; T. Fahima; V. Glikson; D. Raats; J. Číhalíková; H. Toegelová; J. Vrána; P. Sourdille; B. Darrier; D. Barabaschi; L. Cattivelli; P. Hernandez; S. Galvez; H. Budak; J.D.G. Jones; K. Witek; G. Yu; I. Small; J. Melonek; R. Zhou; T. Belova; K. Kanyuka; R. King; K. Nilsen; S. Walkowiak; R. Cuthbert; R. Knox; K. Wiebe; D. Xiang; A. Rohde; T. Gold; J. Čížková; B.A. Akpinar; S. Biyiklioglu; L. Gao; A. N’Daiye; M. Kubaláková; J. Šafář; F. Alfama; A-F Adam-Blondon; R. Flores; C. Guerche; M. Loaec; H. Quesneville; J. Condie; J. Ens; C.S. Koh; R. Maclachlan; Y. Tan; A. Alberti; J-M Aury; V. Barbe; A. Couloux; C. Cruaud; K. Labadie; S. Mangenot; P. Wincker; G. Kaur; M. Luo; S. Sehgal; P. Chhuneja; O.P. Gupta; S. Jindal; P. Kaur; P. Malik; P. Sharma; B. Yadav; N.K. Singh; J.P. Khurana; C. Chaudhary; P. Khurana; V. Kumar; A. Mahato; S. Mathur; A. Sevanthi; N. Sharma; R.S. Tomar; K. Holušová; O. Plíhal; M.D. Clark; D. Heavens; G. Kettleborough; J. Wright; B. Balcárková; Y. Hu; E. Salina; N. Ravin; K. Skryabin; A. Beletsky; V. Kadnikov; A. Mardanov; M. Nesterov; A. Rakitin; E. Sergeeva; H. Handa; H. Kanamori; S. Katagiri; F. Kobayashi; S. Nasuda; T. Tanaka; J. Wu; F. Cattonaro; M. Jiumeng; K.G. Kugler; M. Pfeifer; S. Sandve; X. Xun; B. Zhan; J. Batley; P.E. Bayer; D. Edwards; S. Hayashi; Z. Tulpová; P. Visendi; L. Cui; X. Du; K. Feng; X. Nie; W. Tong; L. Wang

doi:10.1126/science.aar7191

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Shifting the limits in wheat research and breeding using a fully annotated reference genome

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Shifting the limits in wheat research and breeding using a fully annotated reference genome

R. Appels, K. Eversole, C. Feuillet, B. Keller, J. Rogers, N. Stein, C.J. Pozniak, N. Stein, F. Choulet, A. Distelfeld, …

Science, Vol.361(6403)

2018

DOI: https://doi.org/10.1126/science.aar7191

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Abstract

Wheat is one of the major sources of food for much of the world. However, because bread wheat's genome is a large hybrid mix of three separate subgenomes, it has been difficult to produce a high-quality reference sequence. Using recent advances in sequencing, the International Wheat Genome Sequencing Consortium presents an annotated reference genome with a detailed analysis of gene content among subgenomes and the structural organization for all the chromosomes. Examples of quantitative trait mapping and CRISPR-based genome modification show the potential for using this genome in agricultural research and breeding. Ramírez-González et al. exploited the fruits of this endeavor to identify tissue-specific biased gene expression and coexpression networks during development and exposure to stress. These resources will accelerate our understanding of the genetic basis of bread wheat.

Details

Title: Shifting the limits in wheat research and breeding using a fully annotated reference genome
Authors/Creators: R. Appels (Author/Creator)
K. Eversole (Author/Creator)
C. Feuillet (Author/Creator)
B. Keller (Author/Creator)
J. Rogers (Author/Creator)
N. Stein (Author/Creator)
C.J. Pozniak (Author/Creator)
N. Stein (Author/Creator)
F. Choulet (Author/Creator)
A. Distelfeld (Author/Creator)
K. Eversole (Author/Creator)
J. Poland (Author/Creator)
G. Ronen (Author/Creator)
O. Barad (Author/Creator)
K. Baruch (Author/Creator)
G. Keeble-Gagnère (Author/Creator)
M. Mascher (Author/Creator)
A.G. Sharpe (Author/Creator)
G. Ben-Zvi (Author/Creator)
A-A Josselin (Author/Creator)
A. Himmelbach (Author/Creator)
F. Balfourier (Author/Creator)
J. Gutierrez-Gonzalez (Author/Creator)
M. Hayden (Author/Creator)
A-A Josselin (Author/Creator)
C. Koh (Author/Creator)
G. Muehlbauer (Author/Creator)
R.K. Pasam (Author/Creator)
E. Paux (Author/Creator)
P. Rigault (Author/Creator)
J. Tibbits (Author/Creator)
V. Tiwari (Author/Creator)
M. Spannagl (Author/Creator)
D. Lang (Author/Creator)
H. Gundlach (Author/Creator)
G. Haberer (Author/Creator)
K.F.X. Mayer (Author/Creator)
D. Ormanbekova (Author/Creator)
V. Prade (Author/Creator)
H. Šimková (Author/Creator)
T. Wicker (Author/Creator)
D. Swarbreck (Author/Creator)
H. Rimbert (Author/Creator)
M. Felder (Author/Creator)
N. Guilhot (Author/Creator)
G. Kaithakottil (Author/Creator)
J. Keilwagen (Author/Creator)
P. Leroy (Author/Creator)
T. Lux (Author/Creator)
S. Twardziok (Author/Creator)
L. Venturini (Author/Creator)
A. Juhász (Author/Creator)
M. Abrouk (Author/Creator)
T. Wicker (Author/Creator)
I. Fischer (Author/Creator)
C. Uauy (Author/Creator)
P. Borrill (Author/Creator)
R.H. Ramirez-Gonzalez (Author/Creator)
D. Arnaud (Author/Creator)
S. Chalabi (Author/Creator)
B. Chalhoub (Author/Creator)
A. Cory (Author/Creator)
R. Datla (Author/Creator)
M.W. Davey (Author/Creator)
J. Jacobs (Author/Creator)
S.J. Robinson (Author/Creator)
B. Steuernagel (Author/Creator)
F. van Ex (Author/Creator)
B.B.H. Wulff (Author/Creator)
M. Benhamed (Author/Creator)
A. Bendahmane (Author/Creator)
L. Concia (Author/Creator)
D. Latrasse (Author/Creator)
M. Alaux (Author/Creator)
J. Bartoš (Author/Creator)
A. Bellec (Author/Creator)
H. Berges (Author/Creator)
J. Doležel (Author/Creator)
C. Feuillet (Author/Creator)
Z. Frenkel (Author/Creator)
B. Gill (Author/Creator)
A. Korol (Author/Creator)
T. Letellier (Author/Creator)
O-A Olsen (Author/Creator)
H. Šimková (Author/Creator)
K. Singh (Author/Creator)
M. Valárik (Author/Creator)
E. van der Vossen (Author/Creator)
S. Vautrin (Author/Creator)
S. Weining (Author/Creator)
A. Korol (Author/Creator)
T. Fahima (Author/Creator)
V. Glikson (Author/Creator)
D. Raats (Author/Creator)
J. Poland (Author/Creator)
J. Číhalíková (Author/Creator)
H. Toegelová (Author/Creator)
J. Vrána (Author/Creator)
P. Sourdille (Author/Creator)
B. Darrier (Author/Creator)
I. Fischer (Author/Creator)
D. Ormanbekova (Author/Creator)
V. Prade (Author/Creator)
D. Barabaschi (Author/Creator)
L. Cattivelli (Author/Creator)
P. Hernandez (Author/Creator)
S. Galvez (Author/Creator)
H. Budak (Author/Creator)
B. Steuernagel (Author/Creator)
J.D.G. Jones (Author/Creator)
K. Witek (Author/Creator)
B.B.H. Wulff (Author/Creator)
G. Yu (Author/Creator)
I. Small (Author/Creator)
J. Melonek (Author/Creator)
R. Zhou (Author/Creator)
T. Belova (Author/Creator)
O-A Olsen (Author/Creator)
K. Kanyuka (Author/Creator)
R. King (Author/Creator)
K. Nilsen (Author/Creator)
S. Walkowiak (Author/Creator)
R. Cuthbert (Author/Creator)
R. Datla (Author/Creator)
R. Knox (Author/Creator)
K. Wiebe (Author/Creator)
D. Xiang (Author/Creator)
A. Rohde (Author/Creator)
T. Gold (Author/Creator)
J. Čížková (Author/Creator)
J. Tibbits (Author/Creator)
H. Budak (Author/Creator)
B.A. Akpinar (Author/Creator)
S. Biyiklioglu (Author/Creator)
G. Muehlbauer (Author/Creator)
J. Poland (Author/Creator)
L. Gao (Author/Creator)
A. N’Daiye (Author/Creator)
J. Číhalíková (Author/Creator)
M. Kubaláková (Author/Creator)
J. Šafář (Author/Creator)
J. Vrána (Author/Creator)
H. Berges (Author/Creator)
A. Bellec (Author/Creator)
S. Vautrin (Author/Creator)
M. Alaux (Author/Creator)
F. Alfama (Author/Creator)
A-F Adam-Blondon (Author/Creator)
R. Flores (Author/Creator)
C. Guerche (Author/Creator)
T. Letellier (Author/Creator)
M. Loaec (Author/Creator)
H. Quesneville (Author/Creator)
S. Walkowiak (Author/Creator)
H. Budak (Author/Creator)
J. Condie (Author/Creator)
J. Ens (Author/Creator)
C.S. Koh (Author/Creator)
R. Maclachlan (Author/Creator)
Y. Tan (Author/Creator)
T. Wicker (Author/Creator)
A. Alberti (Author/Creator)
J-M Aury (Author/Creator)
F. Balfourier (Author/Creator)
V. Barbe (Author/Creator)
A. Couloux (Author/Creator)
C. Cruaud (Author/Creator)
K. Labadie (Author/Creator)
S. Mangenot (Author/Creator)
P. Wincker (Author/Creator)
B. Gill (Author/Creator)
G. Kaur (Author/Creator)
M. Luo (Author/Creator)
S. Sehgal (Author/Creator)
P. Chhuneja (Author/Creator)
O.P. Gupta (Author/Creator)
S. Jindal (Author/Creator)
P. Kaur (Author/Creator)
P. Malik (Author/Creator)
P. Sharma (Author/Creator)
B. Yadav (Author/Creator)
N.K. Singh (Author/Creator)
J.P. Khurana (Author/Creator)
C. Chaudhary (Author/Creator)
P. Khurana (Author/Creator)
V. Kumar (Author/Creator)
A. Mahato (Author/Creator)
S. Mathur (Author/Creator)
A. Sevanthi (Author/Creator)
N. Sharma (Author/Creator)
R.S. Tomar (Author/Creator)
E. van der Vossen (Author/Creator)
S. Vautrin (Author/Creator)
G. Kaur (Author/Creator)
S. Sehgal (Author/Creator)
K. Holušová (Author/Creator)
O. Plíhal (Author/Creator)
M.D. Clark (Author/Creator)
D. Heavens (Author/Creator)
G. Kettleborough (Author/Creator)
J. Wright (Author/Creator)
M. Valárik (Author/Creator)
M. Abrouk (Author/Creator)
B. Balcárková (Author/Creator)
K. Holušová (Author/Creator)
Y. Hu (Author/Creator)
E. Salina (Author/Creator)
N. Ravin (Author/Creator)
K. Skryabin (Author/Creator)
A. Beletsky (Author/Creator)
V. Kadnikov (Author/Creator)
A. Mardanov (Author/Creator)
M. Nesterov (Author/Creator)
A. Rakitin (Author/Creator)
E. Sergeeva (Author/Creator)
H. Handa (Author/Creator)
H. Kanamori (Author/Creator)
S. Katagiri (Author/Creator)
F. Kobayashi (Author/Creator)
S. Nasuda (Author/Creator)
T. Tanaka (Author/Creator)
J. Wu (Author/Creator)
F. Cattonaro (Author/Creator)
M. Jiumeng (Author/Creator)
K.G. Kugler (Author/Creator)
M. Pfeifer (Author/Creator)
S. Sandve (Author/Creator)
X. Xun (Author/Creator)
B. Zhan (Author/Creator)
M. Abrouk (Author/Creator)
J. Batley (Author/Creator)
P.E. Bayer (Author/Creator)
D. Edwards (Author/Creator)
S. Hayashi (Author/Creator)
H. Toegelová (Author/Creator)
Z. Tulpová (Author/Creator)
P. Visendi (Author/Creator)
S. Weining (Author/Creator)
L. Cui (Author/Creator)
X. Du (Author/Creator)
K. Feng (Author/Creator)
X. Nie (Author/Creator)
W. Tong (Author/Creator)
L. Wang (Author/Creator)
S. Galvez (Author/Creator)
G. Kaithakottil (Author/Creator)
T. Lux (Author/Creator)
D. Ormanbekova (Author/Creator)
V. Prade (Author/Creator)
K. Eversole (Author/Creator)
P. Borrill (Author/Creator)
P. Hernandez (Author/Creator)
K. Kanyuka (Author/Creator)
M. Mascher (Author/Creator)
K. Nilsen (Author/Creator)
I. Small (Author/Creator)
D. Swarbreck (Author/Creator)
Publication Details: Science, Vol.361(6403)
Publisher: American Association for the Advancement of Science
Identifiers: 991005543900207891
Copyright: © 2018 American Association for the Advancement of Science
Murdoch Affiliation: School of Veterinary and Life Sciences
Language: English
Resource Type: Journal article

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Collaboration types: Industry collaboration; Domestic collaboration; International collaboration
Citation topics: 3 Agriculture, Environment & Ecology; 3.4 Crop Science; 3.4.96 QTL
Web Of Science research areas: Genetics & Heredity
ESI research areas: Molecular Biology & Genetics