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Journal article
Whole-Genome Resequencing of the Wild Barley Diversity Collection: A Resource for Identifying and Exploiting Genetic Variation for Cultivated Barley Improvement
G3 : genes - genomes - genetics, Vol.16(1), jkaf261
2025
PMID: 41206694
Abstract
To exploit allelic variation in Hordeum vulgare subsp. spontaneum, the Wild Barley Diversity Collection was subjected to paired-end Illumina sequencing at ∼9X depth and evaluated for several agronomic traits. We discovered 240.2 million single nucleotide polymorphisms (SNPs) after alignment to the Morex V3 assembly and 24.4 million short (1-50 bp) insertions and deletions. A genome-wide association study of lemma color identified one marker-trait association (MTA) on chromosome 1H close to HvBlp, the cloned gene controlling black lemma. Four MTAs were identified for seedling stem rust resistance, including two novel loci on chromosomes 1H and 6H and one co-locating to the complex RMRL1-RMRL2 locus on 5H. The whole-genome sequence data described herein will facilitate the identification and utilization of new alleles for barley improvement.
Details
- Title
- Whole-Genome Resequencing of the Wild Barley Diversity Collection: A Resource for Identifying and Exploiting Genetic Variation for Cultivated Barley Improvement
- Authors/Creators
- Rebecca Spanner - University of MinnesotaAhmad H Sallam - Twin Cities Public TelevisionYu Guo - Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK)Murukarthick Jayakodi - Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK)Axel Himmelbach - Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK)Anne Fiebig - Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK)Jamie Simmons - University of MinnesotaGerit Bethke - Twin Cities Public TelevisionYoonjung Lee - University of MinnesotaLuis Willian Pacheco ArgeYinjie Qiu - University of MinnesotaAna Badea - Agriculture and Agri-Food CanadaMichael Baum - Biodiversity and Crop Improvement, International Center for Agricultural Research in the Dry Areas (ICARDA), Rabat, BP6299, MoroccoFrançois Belzile - Université LavalRoi Ben-David - Agricultural Research OrganizationRobert Brueggeman - Washington State UniversityAustin Case - Anheuser-Busch InBev, Fort Collins, CO, 80524, USALuigi Cattivelli - Consiglio per la ricerca in agricoltura e l’analisi dell’economia agrariaMichael Davis - American Bar AssociationJaroslav Doležel - Czech Academy of Sciences, Institute of Experimental BotanyChristoph Dockter - Carlsberg LaboratoryAntonin Dreiseitl - Agricultural Research Institute KromerizRyan Gavin - Twin Cities Public TelevisionLior Glick - Tel Aviv UniversityStephan Greiner - Roche Information Solutions (RIS), Data, Analytics & Research (DA&R), Roche Diagnostics GmbH, Penzberg, Bavaria, 82377, GermanyRuth Hamilton - James Hutton InstitutePatrick M Hayes - Oregon State UniversityScott Heisel - American Bar AssociationCynthia Henson - Cereal Disease LaboratoryBenjamin Kilian - University of BonnTakao Komatsuda - Shandong Academy of Agricultural SciencesChengdao Li - Murdoch University, Centre for Crop and Food InnovationCheng Liu - Shandong Academy of Agricultural SciencesRamamurthy Mahalingam - Cereal Disease LaboratoryMaren Maruschewski - Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK)Oadi Matny - Twin Cities Public TelevisionAndreas Maurer - Martin Luther University Halle-WittenbergKlaus F X Mayer - Helmholtz Zentrum MünchenItay Mayrose - Tel Aviv UniversityMatthew Moscou - Cereal Disease LaboratoryGary J Muehlbauer - University of MinnesotaYouko Oono - National Agriculture and Food Research OrganizationFrank Ordon - Julius Kühn-InstitutHakan Özkan - Cukurova UniversityAles Pecinka - Czech Academy of Sciences, Institute of Experimental BotanyDragan Perovic - Julius Kühn-InstitutKlaus Pillen - Martin Luther University Halle-WittenbergMohammad Pourkheirandish - School of Agriculture, Food, and Ecosystem Sciences (SAFES), University of Melbourne, Melbourne, Victoria, 3010, AustraliaJoanne Russell - James Hutton InstituteJan Šafář - Czech Academy of Sciences, Institute of Experimental BotanySilvio Salvi - University of BolognaMiguel Sanchez-Garcia - Biodiversity and Crop Improvement, International Center for Agricultural Research in the Dry Areas (ICARDA), Rabat, BP6299, MoroccoKazuhiro Sato - Okayama UniversityThomas Schmutzer - Martin Luther University Halle-WittenbergUwe Scholz - Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK)Jeness Scott - Twin Cities OrthopedicsGurcharn Singh Brar - University of AlbertaKevin P Smith - University of MinnesotaMark E Sorrells - Cornell UniversityManuel Spannagl - Helmholtz Zentrum MünchenNils Stein - Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK)Alessandro Tondelli - Consiglio per la ricerca in agricoltura e l’analisi dell’economia agrariaRoberto Tuberosa - University of BolognaJames Tucker - Brandon UniversityThomas Turkington - Alberta Crop Industry Development FundJan Valkoun - Genetic Resources Unit, International Center for Agricultural Research in the Dry Areas (ICARDA), Praha, 15000, Czech RepublicRamesh Pal Singh Verma - Biodiversity and Crop Improvement, International Center for Agricultural Research in the Dry Areas (ICARDA), Rabat, BP6299, MoroccoMarcus A Vinje - Cereal Disease LaboratoryMaria von Korff - Cluster of Excellence on Plant SciencesJason G Walling - Cereal Disease LaboratoryRobbie Waugh - James Hutton InstituteRoger P Wise - Iowa State UniversityBrande B H Wulff - King Abdullah University of Science and TechnologyShengming Yang - Edward T. Schafer Agricultural Research CenterGuoping Zhang - Zhejiang UniversityPeter L Morrell - University of MinnesotaMartin Mascher - Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK)Brian J Steffenson - University of Minnesota
- Publication Details
- G3 : genes - genomes - genetics, Vol.16(1), jkaf261
- Publisher
- Oxford University Press on behalf of The Genetics Society of America
- Identifiers
- 991005831949107891
- Copyright
- US Government employee(s) and is in the public domain in the US.
- Murdoch Affiliation
- Western Crop Genetics Alliance; Centre for Crop and Food Innovation; School of Agricultural Sciences
- Language
- English
- Resource Type
- Journal article
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