Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI943

W. Reeve; E. Drew; R. Ballard; V. Melino; R. Tian; S. De Meyer; L. Bräu; M. Ninawi; H. Daligault; K. Davenport; T. Erkkila; L. Goodwin; W. Gu; C. Monk; H. Teshima; Y. Xu; P. Chain; N. Kyrpides

doi:10.4056/sigs.4468250

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Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI943

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Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI943

W. Reeve, E. Drew, R. Ballard, V. Melino, R. Tian, S. De Meyer, L. Bräu, M. Ninawi, H. Daligault, K. Davenport, …

Standards in Genomic Sciences, Vol.9(2)

2013

DOI: https://doi.org/10.4056/sigs.4468250

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Abstract

Rhizobium leguminosarum bv. trifolii SRDI943 (strain syn. V2-2) is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Trifolium michelianum Savi cv. Paradana that had been grown in soil collected from a mixed pasture in Victoria, Australia. This isolate was found to have a broad clover host range but was sub-optimal for nitrogen fixation with T. subterraneum (fixing 20-54% of reference inoculant strain WSM1325) and was found to be totally ineffective with the clover species T. polymorphum and T. pratense. Here we describe the features of R. leguminosarum bv. trifolii strain SRDI943, together with genome sequence information and annotation. The 7,412,387 bp high-quality-draft genome is arranged into 5 scaffolds of 5 contigs, contains 7,317 protein-coding genes and 89 RNA-only encoding genes, and is one of 100 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.

Details

Title: Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI943
Authors/Creators: W. Reeve (Author/Creator) - Murdoch University
E. Drew (Author/Creator) - South Australian Research and Development Institute
R. Ballard (Author/Creator) - South Australian Research and Development Institute
V. Melino (Author/Creator) - Murdoch University
R. Tian (Author/Creator) - Murdoch University
S. De Meyer (Author/Creator) - Murdoch University
L. Bräu (Author/Creator) - Deakin University
M. Ninawi (Author/Creator) - Murdoch University
H. Daligault (Author/Creator)
K. Davenport (Author/Creator)
T. Erkkila (Author/Creator)
L. Goodwin (Author/Creator) - Los Alamos National Laboratory
W. Gu (Author/Creator)
C. Monk (Author/Creator)
H. Teshima (Author/Creator) - Los Alamos National Laboratory
Y. Xu (Author/Creator)
P. Chain (Author/Creator)
N. Kyrpides (Author/Creator) - Joint Genome Institute
Publication Details: Standards in Genomic Sciences, Vol.9(2)
Publisher: Genomic Standards Consortium
Identifiers: 991005541219307891
Copyright: © The Author 2013
Murdoch Affiliation: Centre for Rhizobium Studies
Language: English
Resource Type: Journal article
Note: This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Collaboration types: Domestic collaboration; International collaboration
Citation topics: 3 Agriculture, Environment & Ecology; 3.97 Plant Pathology; 3.97.892 Rhizobium-Legume Symbiosis
Web Of Science research areas: Genetics & Heredity; Microbiology
ESI research areas: Molecular Biology & Genetics