Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565

W. Reeve; E. Drew; R. Ballard; V. Melino; R. Tian; S. De Meyer; L. Bräu; M. Ninawi; H. Teshima; L. Goodwin; P. Chain; K. Liolios; A. Pati; K. Mavromatis; N. Ivanova; V. Markowitz; T. Woyke; N. Kyrpides

doi:10.4056/sigs.4468250

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Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565

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Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565

W. Reeve, E. Drew, R. Ballard, V. Melino, R. Tian, S. De Meyer, L. Bräu, M. Ninawi, H. Teshima, L. Goodwin, …

Standards in Genomic Sciences, Vol.9(2), pp.1-14

2013

DOI: https://doi.org/10.4056/sigs.4468250

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Abstract

Rhizobium leguminosarum bv. trifolii SRDI565 (syn. N8-J) is an aerobic, motile, Gram-negative, non-spore-forming rod. SRDI565 was isolated from a nodule recovered from the roots of the annual clover Trifolium subterraneum subsp. subterraneum grown in the greenhouse and inoculated with soil collected from New South Wales, Australia. SRDI565 has a broad host range for nodulation within the clover genus, however N2-fixation is sub-optimal with some Trifolium species and ineffective with others. Here we describe the features of R. leguminosarum bv. trifolii strain SRDI565, together with genome sequence information and annotation. The 6,905,599 bp high-quality-draft genome is arranged into 7 scaffolds of 7 contigs, contains 6,750 protein-coding genes and 86 RNA-only encoding genes, and is one of 100 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.

Details

Title: Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565
Authors/Creators: W. Reeve (Author/Creator) - Murdoch University
E. Drew (Author/Creator) - South Australian Research and Development Institute
R. Ballard (Author/Creator) - South Australian Research and Development Institute
V. Melino (Author/Creator) - Murdoch University
R. Tian (Author/Creator) - Murdoch University
S. De Meyer (Author/Creator) - Murdoch University
L. Bräu (Author/Creator) - Deakin University
M. Ninawi (Author/Creator) - Murdoch University
H. Teshima (Author/Creator) - Los Alamos National Laboratory
L. Goodwin (Author/Creator) - Los Alamos National Laboratory
P. Chain (Author/Creator)
K. Liolios (Author/Creator) - Joint Genome Institute
A. Pati (Author/Creator) - Joint Genome Institute
K. Mavromatis (Author/Creator) - Joint Genome Institute
N. Ivanova (Author/Creator) - Joint Genome Institute
V. Markowitz (Author/Creator) - Lawrence Berkeley National Laboratory
T. Woyke (Author/Creator) - Joint Genome Institute
N. Kyrpides (Author/Creator) - Joint Genome Institute
Publication Details: Standards in Genomic Sciences, Vol.9(2), pp.1-14
Publisher: Genomic Standards Consortium
Identifiers: 991005542836607891
Copyright: © The Author 2013
Murdoch Affiliation: Centre for Rhizobium Studies
Language: English
Resource Type: Journal article

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Collaboration types: Domestic collaboration; International collaboration
Citation topics: 3 Agriculture, Environment & Ecology; 3.97 Plant Pathology; 3.97.892 Rhizobium-Legume Symbiosis
Web Of Science research areas: Genetics & Heredity; Microbiology
ESI research areas: Molecular Biology & Genetics