Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417

W.G. Reeve; J. Terpolilli; V. Melino; J. Ardley; R Tian; S. De Meyer; R. Tiwari; R. Yates; G. O'Hara; J. Howieson; M. Ninawi; H. Teshima; D. Bruce; C. Detter; R. Tapia; C. Han; C-L Wei; M. Huntemann; J. Han; I-M Chen; K. Mavromatis; V. Markowitz; N. Ivanova; G. Ovchinnikova; I. Pagani; A. Pati; L. Goodwin; L. Peters; T. Woyke; N Kyrpides

doi:10.4056/sigs.4518260

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Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417

Journal article

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Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417

W.G. Reeve, J. Terpolilli, V. Melino, J. Ardley, R Tian, S. De Meyer, R. Tiwari, R. Yates, G. O'Hara, J. Howieson, …

Standards in Genomic Sciences, Vol.9(2), pp.273-282

2013

DOI: https://doi.org/10.4056/sigs.4518260

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Abstract

Bradyrhizobium sp strain WSM1417 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen-(N2) fixing root nodule of Lupinus sp. collected in Papudo, Chile, in 1995. However, this microsymbiont is a poorly effective N2-fixer with the legume host Lupinus angustifolius L.; a lupin species of considerable economic importance in both Chile and Australia. The symbiosis formed with L. angustifolius produces less than half of the dry matter achieved by the symbioses with commercial inoculant strains such as Bradyrhizobium sp. strain WSM471. Therefore, WSM1417 is an important candidate strain with which to investigate the genetics of effective N2 fixation in the lupin-bradyrhizobia symbioses. Here we describe the features of Bradyrhizobium sp. strain WSM1417, together with genome sequence information and annotation. The 8,048,963 bp high-quality-draft genome is arranged in a single scaffold of 2 contigs, contains 7,695 protein-coding genes and 77 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Community Sequencing Program.

Details

Title: Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417
Authors/Creators: W.G. Reeve (Author/Creator)
J. Terpolilli (Author/Creator)
V. Melino (Author/Creator)
J. Ardley (Author/Creator)
R Tian (Author/Creator)
S. De Meyer (Author/Creator)
R. Tiwari (Author/Creator)
R. Yates (Author/Creator)
G. O'Hara (Author/Creator)
J. Howieson (Author/Creator)
M. Ninawi (Author/Creator)
H. Teshima (Author/Creator)
D. Bruce (Author/Creator)
C. Detter (Author/Creator)
R. Tapia (Author/Creator)
C. Han (Author/Creator)
C-L Wei (Author/Creator)
M. Huntemann (Author/Creator)
J. Han (Author/Creator)
I-M Chen (Author/Creator)
K. Mavromatis (Author/Creator)
V. Markowitz (Author/Creator)
N. Ivanova (Author/Creator)
G. Ovchinnikova (Author/Creator)
I. Pagani (Author/Creator)
A. Pati (Author/Creator)
L. Goodwin (Author/Creator)
L. Peters (Author/Creator)
T. Woyke (Author/Creator)
N Kyrpides (Author/Creator)
Publication Details: Standards in Genomic Sciences, Vol.9(2), pp.273-282
Publisher: Genomic Standards Consortium
Identifiers: 991005544555207891
Copyright: © Reeve et al. 2013
Murdoch Affiliation: Centre for Rhizobium Studies
Language: English
Resource Type: Journal article

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Collaboration types: Domestic collaboration; International collaboration
Citation topics: 3 Agriculture, Environment & Ecology; 3.83 Bioengineering; 3.83.167 Microbial Diversity
Web Of Science research areas: Genetics & Heredity; Microbiology
ESI research areas: Molecular Biology & Genetics