High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Burkholderia sp. strain UYPR1.413

S.E. De Meyer; E. Fabiano; R. Tian; P. Van Berkum; R. Seshadri; T.B.K. Reddy; V. Markowitz; N. Ivanova; A. Pati; T. Woyke; J. Howieson; N. Kyrpides; W. Reeve

doi:10.1186/s40793-015-0018-9

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High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Burkholderia sp. strain UYPR1.413

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High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Burkholderia sp. strain UYPR1.413

S.E. De Meyer, E. Fabiano, R. Tian, P. Van Berkum, R. Seshadri, T.B.K. Reddy, V. Markowitz, N. Ivanova, A. Pati, T. Woyke, …

Standards in Genomic Sciences, Vol.10(1)

2015

DOI: https://doi.org/10.1186/s40793-015-0018-9

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Abstract

Burkholderia sp. strain UYPR1.413 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Parapiptadenia rigida collected at the Angico plantation, Mandiyu, Uruguay, in December 2006. A survey of symbionts of P. rigida in Uruguay demonstrated that this species is nodulated predominantly by Burkholderia microsymbionts. Moreover, Burkholderia sp. strain UYPR1.413 is a highly efficient nitrogen fixing symbiont with this host. Currently, the only other sequenced isolate to fix with this host is Cupriavidus sp. UYPR2.512. Therefore, Burkholderia sp. strain UYPR1.413 was selected for sequencing on the basis of its environmental and agricultural relevance to issues in global carbon cycling, alternative energy production, and biogeochemical importance, and is part of the GEBA-RNB project. Here we describe the features of Burkholderia sp. strain UYPR1.413, together with sequence and annotation. The 10,373,764 bp high-quality permanent draft genome is arranged in 336 scaffolds of 342 contigs, contains 9759 protein-coding genes and 77 RNA-only encoding genes.

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Title: High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Burkholderia sp. strain UYPR1.413
Authors/Creators: S.E. De Meyer (Author/Creator) - Murdoch University
E. Fabiano (Author/Creator) - Instituto de Investigaciones Biológicas Clemente Estable
R. Tian (Author/Creator) - Murdoch University
P. Van Berkum (Author/Creator) - Agricultural Research Service
R. Seshadri (Author/Creator) - Joint Genome Institute
T.B.K. Reddy (Author/Creator) - Joint Genome Institute
V. Markowitz (Author/Creator) - Lawrence Berkeley National Laboratory
N. Ivanova (Author/Creator) - Joint Genome Institute
A. Pati (Author/Creator) - Joint Genome Institute
T. Woyke (Author/Creator) - Joint Genome Institute
J. Howieson (Author/Creator) - Murdoch University
N. Kyrpides (Author/Creator) - King Abdulaziz University
W. Reeve (Author/Creator) - Murdoch University
Publication Details: Standards in Genomic Sciences, Vol.10(1)
Publisher: Biomed Central
Identifiers: 991005541202407891
Copyright: © 2015 De Meyer et al.
Murdoch Affiliation: Centre for Rhizobium Studies
Language: English
Resource Type: Journal article

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Collaboration types: Domestic collaboration; International collaboration
Citation topics: 3 Agriculture, Environment & Ecology; 3.97 Plant Pathology; 3.97.892 Rhizobium-Legume Symbiosis
Web Of Science research areas: Genetics & Heredity; Microbiology
ESI research areas: Molecular Biology & Genetics