High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512

S.E. De Meyer; E. Fabiano; R. Tian; P. Van Berkum; R. Seshadri; T.B.K. Reddy; V. Markowitz; N.N Ivanova; A. Pati; T. Woyke; J. Howieson; N.C Kyrpides; W. Reeve

doi:10.1186/1944-3277-10-13

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High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512

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High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512

S.E. De Meyer, E. Fabiano, R. Tian, P. Van Berkum, R. Seshadri, T.B.K. Reddy, V. Markowitz, N.N Ivanova, A. Pati, T. Woyke, …

Standards in Genomic Sciences, Vol.10(1)

2015

DOI: https://doi.org/10.1186/1944-3277-10-13

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Abstract

Cupriavidus sp. strain UYPR2.512 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Parapiptadenia rigida grown in soils from a native forest of Uruguay. Here we describe the features of Cupriavidus sp. strain UYPR2.512, together with sequence and annotation. The 7,858,949 bp high-quality permanent draft genome is arranged in 365 scaffolds of 369 contigs, contains 7,411 protein-coding genes and 76 RNA-only encoding genes, and is part of the GEBA-RNB project proposal.

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Title: High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512
Authors/Creators: S.E. De Meyer (Author/Creator) - Murdoch University
E. Fabiano (Author/Creator) - Instituto de Investigaciones Biológicas Clemente Estable
R. Tian (Author/Creator) - Murdoch University
P. Van Berkum (Author/Creator) - Agricultural Research Service
R. Seshadri (Author/Creator) - Joint Genome Institute
T.B.K. Reddy (Author/Creator) - Joint Genome Institute
V. Markowitz (Author/Creator) - Lawrence Berkeley National Laboratory
N.N Ivanova (Author/Creator) - Joint Genome Institute
A. Pati (Author/Creator) - Joint Genome Institute
T. Woyke (Author/Creator) - Joint Genome Institute
J. Howieson (Author/Creator) - Murdoch University
N.C Kyrpides (Author/Creator) - King Abdulaziz University
W. Reeve (Author/Creator) - Murdoch University
Publication Details: Standards in Genomic Sciences, Vol.10(1)
Publisher: Genomic Standards Consortium
Identifiers: 991005543252307891
Murdoch Affiliation: Centre for Rhizobium Studies
Language: English
Resource Type: Journal article

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Collaboration types: Domestic collaboration; International collaboration
Citation topics: 3 Agriculture, Environment & Ecology; 3.83 Bioengineering; 3.83.167 Microbial Diversity
Web Of Science research areas: Genetics & Heredity; Microbiology
ESI research areas: Molecular Biology & Genetics